Table 6 Description of 189 histomorphometric and 650 proteomic features in Dataset S 2 to be used to identify patients who will and who will not suffer CaP recurrence within 5 years
Morphological | # | Description |
Gland Morphology | 100 | Area Ratio, distance Ratio, Standard Deviation of Distance, Variance of Distance, Distance Ratio,Perimeter Ratio, Smoothness, Invariant Moment 1–7, Fractal Dimension, Fourier Descriptor 1–10 (Mean, Std. Dev, Median, Min/ Max of each) |
Architectural | Â | Description |
Voronoi Diagram | 12 | Polygon area, perimeter, chord length: mean, std. dev., min/max ratio, disorder |
Delaunay Triangulation | 8 | Triangle side length, area: mean, std. dev., min/max ratio, disorder |
Minimum Spanning Tree | 4 | Edge length: mean, std. dev., min/max ratio, disorder |
Co-occurring Gland Tensors | 39 | Entropy, energy: mean, std. dev., range |
Gland Subgraphs | 26 | Eccentricity, Clustering coefficient C, D, and E, largest connected component: mean, std. dev. |
Proteomic | Â | Description |
Proteins Identified | 650 | Protein-disulfide isomerase A6, T-complex protein subunit delta, ADP-ribosylation factor 1/3, Protein di-sulfide-isomerase, Ras GTPase-activating-like protein IQGAP2, T-complex protein subunit beta, Ras-related protein Rab-5C, ATP-dependent RNA helicase DX3X/DDX3Y, 40S ribosomal protein S17, Serine/arginine-rich splicing factor 7, Tubulin alpha-1A chain/alpha-3C/D chain/ alpha-3E chain, Laminin subunit alpha-4, Collagen alpha-1 (VIII) chain, Tubulin-tyrosine ligase-like protein 12 |