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Figure 2 | BMC Medical Imaging

Figure 2

From: An automated method for analysis of microcirculation videos for accurate assessment of tissue perfusion

Figure 2

Detailed diagram of pre-processing and vessel segmentation. Figure 2 provides a detailed diagram of preprocessing and segmentation steps for different threshold levels. It starts with the averaged frame. For 10 different threshold levels, the parameters of CLAHE (Contrast Limited Adaptive Histogram Equalization) and median filter vary throughout the process. For the first threshold level, the window size of CLAHE is kept small. Median filter is applied right after histogram equalization with a small filter size such as 3 × 3. Median filtering is followed by image adjustment. The preprocessed image is converted to binary image using the first threshold level. Euclidean Distance Transform (EDT) is calculated for the binary image. Diameter and angle parameters are extracted from EDT and with the addition of contrast ratio; three parameters are used to determine if a pixel belongs to a vessel.

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