Table 3 Selected major medical image analysis tools potentially suitable for morphomic analysis, features and limitations

Slice-o-matic

http://www.tomovision.com/products/sliceomatic.html

N

N

N (Windows-only)

N

N

N

N

ImageJ

https://imagej.nih.gov/ij/

N

N

Y (Java app)

Java only

N

Y

Y

Materialize

http://www.materialise.com/en/medical/software/mimics

N

N

N(Windows-only)

N

N

N

N

Segment

https://github.com/Cardiac-MR-Group-Lund/segment-open/

N

N

N (Windows-only)

Matlab only

N

Y

Y

MIA

http://mia.sourceforge.net/

Y

N

N (POSIX-only)

C++ only

N

Y

Y

ITKSnap

http://www.itksnap.org/pmwiki/pmwiki.php

N

N

Y (binaries)

C++ only

N

Y

Y

3DSlicer

https://www.slicer.org/

N

N

Y (binaries)

Python C++

N

Y

Y

Osirix

http://www.osirix-viewer.com/

N

N

N (Mac only)

Objective C only

N

Y

Y

Nora

http://www.nora-imaging.com/

N

Y

Y

N

N

Y

N

CoreSlicer

https://www.coreslicer.com

Y

Y

Y

Any language

Y

Y

Y